How to fill seams in wood floor

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Our wood floor is car decking with the v-groove seam up.  We are planing to sand and refinish the floor and want to fill the V-grove seam (a huge dirt catcher!).

My question is what would be the best filler product that wouldn't crack in the future and would also hold the floor finish we put on.  We will be painting the floor after we fill the seams and sand the entire floor.

Your recommendation for a filler for the grooves and any other tips will be greatly appreciated.  

Also would 2-part epoxy paint as a finish work well?  

This floor is in the living room of our cabin.   A wood stove is the main source of heat in the room.  The room is 12 x 14 feet.

Thank you.

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